Reference

All functions
ListOrNULL-class	Class Union for list or NULL
MatrixOrNULL-class	Class Union for matrix or NULL
SplitTypeRdata-class	An S4 class to represent the splitTypeR data
SplitTypeRdata()	Create a SplitTypeRdata object
classification(<SplitTypeRdata>)	Getter for the classification slot in a SplitTypeRdata class
`classification<-`(<SplitTypeRdata>)	Replacement of the classification slot in a SplitTypeRdata object
`classification<-`()	Generic function for replacement of the classification slot in a class
classification()	Generic function for getting the classification slot in a class
expNormalCountsDemo	Simulated normalized expected counts for 30 demonstration samples
getGeneSignatures()	Return the selected gene list signatures
getGeneSignaturesNames()	List the names of the available signatures
getGenesInSignature()	Return the genes for a specific signature
gsvaResults(<SplitTypeRdata>)	Getter for the signatures slot in a SplitTypeRdata class
`gsvaResults<-`(<SplitTypeRdata>)	Replacement of gsvaResults slot in a SplitTypeRdata object
`gsvaResults<-`()	Generic function for replacement of gsvaResults slot in a class
gsvaResults()	Generic function for getting the gsvaResults slot in a class
model(<SplitTypeRdata>)	Getter for the model slot in a SplitTypeRdata class
`model<-`(<SplitTypeRdata>)	Replacement of model slot in a SplitTypeRdata object
`model<-`()	Generic function for replacement of model slot in a class
model()	Generic function for getting the model slot in a class
permutations(<SplitTypeRdata>)	Getter for the signatures slot in a SplitTypeRdata class
`permutations<-`(<SplitTypeRdata>)	Replacement of permutations slot in a SplitTypeRdata object
`permutations<-`()	Generic function for replacement of permutations slot in a class
permutations()	Generic function for getting the permutations slot in a class
plotDensityWithUpscalingSamplesBimodal()	Graph both the alternative and the signature distributions obtained for a specific signature
plotPermutationSamplesDistribution()	Graph showing both the alternative and the signature distributions obtained for a specific signature
plotPermutationSamplesNormal()	Graph the enrichment results as violin plots from the permutation step
runSubtypingBimodal()	Classification of heterogeneous biological samples based on gene signature lists using a mixture of two normal distributions
show(<SplitTypeRdata>)	Show a summary of a SplitTypeRdata object
signatures(<SplitTypeRdata>)	Getter for the signatures slot in a SplitTypeRdata class
`signatures<-`(<SplitTypeRdata>)	Replacement of signatures slot in a SplitTypeRdata object
`signatures<-`()	Generic function for replacement of signatures slot in a class
signatures()	Generic function for getting the signatures slot in a class
signaturesDemo	Demonstration gene signatures for PDAC subtyping
splitTypeR-package splitTypeR	Transcriptomic classification using multimodal distributions
standardDeviation(<SplitTypeRdata>)	Getter for the standardDeviation slot in a SplitTypeRdata class
`standardDeviation<-`(<SplitTypeRdata>)	Replacement of the standardDeviation slot in a SplitTypeRdata object
`standardDeviation<-`()	Generic function for replacement of standardDeviation slot in a class
standardDeviation()	Generic function for getting the standardDeviation slot in a class
threshold(<SplitTypeRdata>)	Getter for the threshold slot in a SplitTypeRdata class
`threshold<-`(<SplitTypeRdata>)	Replacement of threshold slot in a SplitTypeRdata object
`threshold<-`()	Generic function for replacement of threshold slot in a class
threshold()	Generic function for getting the threshold slot in a class
upscaling(<SplitTypeRdata>)	Getter for the upscaling slot in a SplitTypeRdata class
`upscaling<-`(<SplitTypeRdata>)	Replacement of the upscaling slot in a SplitTypeRdata object
`upscaling<-`()	Generic function for replacement of the upscaling slot in a class
upscaling()	Generic function for getting the upscaling slot in a class