An S4 class to represent the splitTypeR data

An S4 class to represent the splitTypeR data

Slots

signatures

NULL or a list of the genes for each signature. The list should have one entry per signature. Default: NULL.

gsvaResults

NULL or a numeric matrix with the sample GSVA results for each signature. The matrix should be have one row per signature. Default: NULL.

permutations

NULL or a list of the permutations results for each signature. The list should have one entry per signature. Default: NULL.

standardDeviation

NULL or a list of the sample standard deviation for each signature. The list should have one entry per signature. Default: NULL.

upscaling

NULL or a list of the upscaling data for each signature. The list should have one entry per signature. Default: NULL.

model

NULL or a list of the mixture models calculated for each signature. The list should have one entry per signature. Default: NULL.

threshold

NULL or a list of the classification thresholds for each signature. The threshold corresponds to the 95th percentile of the "low-mean" distribution of the mixture model. The list should have one entry per signature. Default: NULL.

classification

NULL or a list of the classification for each signature. The list should have one entry per signature. Default: NULL.

Author

Astrid Deschênes