Print a splitTypeResults object

Print a splitTypeResults object

# S3 method for class 'splitTypeResults'
print(x, ...)

Arguments

x

the output object from runSubtyping function to be printed

...

arguments passed to or from other methods

Value

an object of class splitTypeResults

Examples

## Loading signatures
data("signaturesDemo")

## Load demo normalized expected counts for 30 patients
data("expNormalCountsDemo")

## Fix seed for reproducibility
set.seed(1221)

## Run classification on the 30 patients using 20 permutations on 75% of 
## the dataset, and 10 points per patient for the up-scaling step
results <- runSubtypingBimodal(geneLists=signaturesDemo, 
    expectedCountsMatrix=expNormalCountsDemo, 
    permRatio=0.75, permNbr=10, upscaleNbr=10)
#> number of iterations= 33 
#> number of iterations= 142 
    
## Print result
print(results)
#> Classification: 
#>            2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_1                              unclassified
#> Patient_2  2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_3                              unclassified
#> Patient_4  2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_5                              unclassified
#> Patient_6  2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_7                              unclassified
#> Patient_8                              unclassified
#> Patient_9                              unclassified
#> Patient_10 2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_11 2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_12                             unclassified
#> Patient_13                             unclassified
#> Patient_14 2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_15                             unclassified
#> Patient_16                             unclassified
#> Patient_17                             unclassified
#> Patient_18 2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_19                             unclassified
#> Patient_20                             unclassified
#> Patient_21 2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_22                             unclassified
#> Patient_23 2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_24 2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_25                             unclassified
#> Patient_26                             unclassified
#> Patient_27 2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_28                             unclassified
#> Patient_29 2018_Tiriac_PDAC_PDO_classical_signature
#> Patient_30 2018_Tiriac_PDAC_PDO_classical_signature
#>            2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_1  2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_2                               unclassified
#> Patient_3  2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_4                               unclassified
#> Patient_5  2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_6                               unclassified
#> Patient_7  2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_8  2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_9  2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_10                              unclassified
#> Patient_11                              unclassified
#> Patient_12 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_13 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_14                              unclassified
#> Patient_15 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_16 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_17 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_18                              unclassified
#> Patient_19 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_20 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_21                              unclassified
#> Patient_22 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_23                              unclassified
#> Patient_24                              unclassified
#> Patient_25 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_26 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_27                              unclassified
#> Patient_28 2018_Tiriac_PDAC_PDO_basal-like_signature
#> Patient_29                              unclassified
#> Patient_30                              unclassified