Create a SplitTypeRdata object

This function creates a SplitTypeRdata object using the values present in the parameters.

Usage

SplitTypeRdata(
  signatures = NULL,
  gsvaResults = NULL,
  permutations = NULL,
  standardDeviation = NULL,
  upscaling = NULL,
  model = NULL,
  threshold = NULL,
  classification = NULL
)

Arguments

signatures

NULL or a list of the genes for each signature. The list should have one entry per signature. Default: NULL.

gsvaResults

NULL or a matrix of the GSVA results for each signature. The matrix should have one row per signature. Default: NULL.

permutations

NULL or a list of the permutations results for each signature. The list should have one entry per signature. Default: NULL.

standardDeviation

NULL or a list of the standard deviation results for each signature. The list should have one entry per signature. Default: NULL.

upscaling

NULL or a list of the upscaling data for each signature. The list should have one entry per signature. Default: NULL.

model

NULL or a list of the mixture models calculated for each signature. The list should have one entry per signature. Default: NULL.

threshold

NULL or a list of the classification thresholds for each signature. The list should have one entry per signature. Default: NULL.

classification

NULL or a list of the classification for each signature. The list should have one entry per signature. Default: NULL.

Value

an object of class SplitTypeRdata that contains all the required parameters needed by the RAIDS workflow.

Author

Astrid Deschênes

Examples

## New object of class "SplitTypeRdata" with default parameters
newSplitData1 <- SplitTypeRdata()

## New object of class "SplitTypeRdata" with non-default parameters
newSplitData2 <- SplitTypeRdata(signatures=list("Signature1"=c("ABL1", 
    "BLM", "BRCA1"), "Signature2"=c("COP1", "RAD50", "FANCD2", "TERF2")), 
    gsvaResults=NULL, permutations=NULL,   
    standardDeviation=NULL, upscaling=NULL, model=NULL, threshold=NULL,
    classification=NULL)