CNprep-package
CNprep: Pre-process DNA Copy Number (CN) Data for Detection of CN Events
CNpreprocessing()
Pre-process DNA copy number (CN) data for detection of CN events.
EMexample
A model-based clustering
annotexample
Annotation table for ROMA CGH platform and human genome version 17.
applyCNPmask()
Apply a mask to a table of copy number events.
cnpexample
Example of a boundary positions table.
makeCNPmask()
Given a set of copy-number events, create a DNA copy-number mask.
normsegs
A reference set of segments
ratexample
Example of copy number log ratio dataset
segexample
Example of a segmented copy number table