CNprep: Pre-process DNA Copy Number (CN) Data for Detection of CN Events

Source: R/CNprep.R

This package evaluates DNA copy number data, using both their initial form (copy number as a noisy function of genomic position) and their approximation by a piecewise-constant function (segmentation), for the purpose of identifying genomic regions where the copy number differs from the norm.

See also

  • CNpreprocessing for pre-processing DNA copy number (CN) data for detection of CN events.

  • makeCNPmask for creating a mask given a set of copy number events.

  • applyCNPmask for applying a mask to a set of copy number events.

Author

Alexander Krasnitz and Guoli Sun

Maintainer: Guoli Sun <guolisun87@gmail.com>