TODO

Source: R/SignatureHeatmap.R

TODO

data(demo_PDAC_TCGA)

Format

a data.frame containing normalized expected counts for genes associated to Basal-like/Classical classification. The rows are containing normalized expected counts. The data.frame contains one column per sample in addition to a column called 'GENE' that contains the name of the genes represented in each row.

References

The TCGA Research Network: https://www.cancer.gov/tcga

See also

  • createHeatmap for creating a heating using a gene list and RNA-seq expression data.

Examples


## Load Miyabayashi et al 2020 gene list used for 
## Basal-like/Classical classification
data(Miyabayashi_2020)

## Load the expression dataset
data(demo_PDAC_TCGA)

## Create a heatmap using the Miyabayashi et al 2020 gene list
createHeatmap(gene_list=Miyabayashi_2020, rna_data=demo_PDAC_TCGA, 
     gene_column="GENE")