The Basal-like and Classical gene list used in Moffitt et al 2015.

Source: R/SignatureHeatmap.R

The Basal-like and Classical gene list used in Moffitt et al 2015.

data(Moffitt_2015)

Format

a data.frame with the following columns:

  • SYMBOL a character string representing the symbol of the gene.

  • Class a character string representing the class (Basal-like or Classical) associated to the gene.

References

Moffitt RA, Marayati R, Flate EL, Volmar KE, Loeza SG, Hoadley KA, Rashid NU, Williams LA, Eaton SC, Chung AH, Smyla JK, Anderson JM, Kim HJ, Bentrem DJ, Talamonti MS, Iacobuzio-Donahue CA, Hollingsworth MA, Yeh JJ. Virtual microdissection identifies distinct tumor- and stroma-specific subtypes of pancreatic ductal adenocarcinoma. Nat Genet. 2015 Oct;47(10):1168-78. doi: 10.1038/ng.3398. Epub 2015 Sep 7. PMID: 26343385; PMCID: PMC4912058.

See also

  • createHeatmap for creating a heating using a gene list and RNA-seq expression data.

Examples


## Load Moffitt et al 2015 gene list used for 
## Basal-like/Classical classification
data(Moffitt_2015)

## The dataset contains 2 columns
## The first column has the gene symbols
## The second column the class assignation (Basal-like or Classical)
head(Moffitt_2015)
#>   SYMBOL      Class
#> 1  VGLL1 Basal-like
#> 2   UCA1 Basal-like
#> 3 S100A2 Basal-like
#> 4   LY6D Basal-like
#> 5  SPRR3 Basal-like
#> 6 SPRR1B Basal-like