The Basal-like and Classical gene list used in Miyabayashi et al 2020.

Source: R/SignatureHeatmap.R

The Basal-like and Classical gene list used in Miyabayashi et al 2020.

data(Miyabayashi_2020)

Format

a data.frame with the following columns:

  • SYMBOL a character string representing the symbol of the gene.

  • Class a character string representing the class (Basal-like or Classical) associated to the gene.

References

Miyabayashi K, Baker LA, Deschênes A, Traub B, Caligiuri G, Plenker D, Alagesan B, Belleau P, Li S, Kendall J, Jang GH, Kawaguchi RK, Somerville TDD, Tiriac H, Hwang CI, Burkhart RA, Roberts NJ, Wood LD, Hruban RH, Gillis J, Krasnitz A, Vakoc CR, Wigler M, Notta F, Gallinger S, Park Y, Tuveson DA. Intraductal Transplantation Models of Human Pancreatic Ductal Adenocarcinoma Reveal Progressive Transition of Molecular Subtypes. Cancer Discov. 2020 Oct;10(10):1566-1589. doi: 10.1158/2159-8290.CD-20-0133. Epub 2020 Jul 23. PMID: 32703770; PMCID: PMC7664990.

See also

  • createHeatmap for creating a heating using a gene list and RNA-seq expression data.

Examples


## Load Miyabayashi et al 2020 gene list used for 
## Basal-like/Classical classification
data(Miyabayashi_2020)

## The dataset contains 2 columns
## The first column has the gene symbols
## The second column the class assignation (Basal-like or Classical)
head(Miyabayashi_2020)
#>   SYMBOL      Class
#> 1  VGLL1 Basal-like
#> 2   UCA1 Basal-like
#> 3 S100A2 Basal-like
#> 4   LY6D Basal-like
#> 5  SPRR3 Basal-like
#> 6 SPRR1B Basal-like