R/enrichViewNet.R
enrichViewNet-package.RdThe enrichViewNet package enables the visualization
of enrichment results, in a format corresponding to the one generated
by gprofiler2
(https://cran.r-project.org/web/packages/gprofiler2/index.html)
under the form of Cytoscape network (https://cytoscape.org/).
In those networks, both gene datasets (GO terms/pathways/protein complexes) and genes are represented as nodes. A edge connect a gene to its datasets. In the current version, only genes present in at least one gene dataset are retained.
createNetwork for transforming functional
enrichment results from gprofiler2 into a Cytoscape network
createEnrichMap for transforming functional
enrichment results from gprofiler2 into an enrichment map