Create a violin plot using the relative AUC and the sensitivity classes (SENSITIVE, AVERAGE, RESISTANT) of the organoids for a specific drug.

The function generates a violin plot using the relative AUC and the sensitivity class information present in a DrugAUCQuantile" object. The function uses [ggplot2::ggplot][ggplot2::ggplot()] function and returns a "ggplot" object. The violin tails of the violins can be trimmed to the range of the data.

plotDrugAUCViolinPlot(drugQuantile, min = 0, max = 100, trim = FALSE)

Arguments

drugQuantile: an object of class "DrugAUCQuantile" which contains the sensitive and resistant organoids for a specific drug.
min: a single numeric representing the minimum value of the y-axis. Default: 0.
max: a single numeric representing the maximum value of the y-axis. The maximum value must be superior to the minimum value. Default: 100.
trim: a logical indicating if the tails of the violins are trimmed to the range of the data. Default: FALSE.

Value

a ggplot object for a violin plot built with the specified data.

Author

Astrid Deschênes, Pascal Belleau

Examples


## Load drug screen dataset for 1 drug
data(drugScreening)

## Calculate the extreme organoids for the methotrexate drug screening
## using a quantile of 1/3
results <- getClassOneDrug(drugScreening=drugScreening,
    drugName="Methotrexate", study="MEGA-TEST", screenType="TEST-01",
    doseType="Averaged", quantile=1/3)

## Plot results
p <- plotDrugAUCViolinPlot(drugQuantile=results, min=20, max=80, trim=TRUE)
plot(p)
#> Warning: Removed 1 rows containing non-finite values (stat_ydensity).
#> Warning: Removed 1 rows containing missing values (geom_point).